This is great stuff, I gave it a spin and I have to say it was really impressive and very fun to watch. Fantastic work!
I put in one of my battles and here are some mistakes I observed:
- Entei took way too much damage on turn 29/30, reducing its health to 0 when it should have been around 40%. I'm not sure what happened here...
- It can't represent Leech Seed recovery very well (it must be nearly impossible to implement)
- Scyther takes normal damage from Stealth Rock.
This is a link to it for your reference:
http://aesoft.org/pokemon/replay-MMF...ed--2011-07-30
I hope you will find this useful and I am really looking forward to this getting better and better because it is one of the most exciting things I have seen in a while. Hats off to you aeo!