In 1v1 CC, if you have a Zoroark / Zorua on your team, it will ask you to choose the order of all 6 Pokemon. However, only one will be used (the one in front). [See post #1343
Originally Posted by Fat Joim
It's intended that you can choose team order if you have a Pokémon with illusion to decide its disguise.
He means in 1v1 CC, where there is no need for this :P