A Question about Action Replay & Pokegen

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(I have no idea if this is the right section, if it's in the wrong section then I'm sorry and it would be cool if a mod would move it ;-;)

YES I know you can use the GTS to deliver Pokemon to your game from Pokegen, but the GTS is going to obsolete soon so I want to prepare for it.

Basically, I make a team of 6 Pokemon with Pokegen and assign them to the party Pokemon on the right-hand side of the window. Then I select them all and then go to the code generator, tick the ‘Selected Pokemon (6)’ box, set the activation button to L, click generate, and then copy and paste the code into the Action Replay’s code manager.

Then I save everything and boot up the Action Replay with Black 2 in it, make sure I've selected the code, start the game, and then when I get into the actual game, I press L and then go to my party.

For some reason, only the first Pokemon appears. The rest of my party places are blank. I’ve tried getting a party of 6 random Pokemon and then trying it, just to see if I need something there to replace, but again, only the first Pokemon gets overwritten.

It's annoying me because I’ve spent hours generating all these codes of teams of 6 only to get one Pokemon. Is there something I'm doing wrong? I really don't have the will to redo >50 Pokemon manually in Pokegen again just to do one thing differently, ugh.
 
I don't think pokegen/action replay discussion is allowed on smogon.
If it is, then this is not the right place regardless.
 
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