I'm sorry to disappoint but for the last few months or so, I've lost a lot of interest in Pokemon in general. I haven't RNGed anything in ages and I haven't been around here much either. I know you've been very patiently waiting for these two and I feel awful having to break my own word, but I won't be RNGing those two.
I'm sure though you should be able to find someone else to help. There's a whole group of people here committed to getting what people like you need for events.
Oh yes, clones have been allowed for ages, although I wouldn't bring it up if they were. From what I've heard and experianced, you'll only be disqualified if you Pokemon is obviously illegal (stuff like having Pokemon with egg moves in non-default Pokeballs, screwy capture locations, or 511+ EVs).
Sorry for such a late response. I wouldn't go around asking others for infornation on Nintendo's hack checks as it's fairly underhanded. That said, I think I can help with a few of your questions.
1) It would depend on what your AR code is doing. For example, hacking an unreleased item on to one of the Pokemon you're using would definitely net you a disqualification.
2) No. Pokecheck's hack check is far more in depth.
3) Not that I'm aware of, no.
Oh, yes, I got your previous VM. Sorry, it's just that with all of the DW Pokemon, I've been doing a lot of breeding and uploading to Pokecheck with smogon on the backburner. Now, I have bred a female DW Shroomish, but it's Adamant, not Jolly. It also comes with Bullet Seed and is even a fully trained Breloom at the moment. Is this an acceptable replacement?