The main benefit of Waterzium manaphy is that you have options against both defensive teams and offensive teams.
The ability to pick between a speedboost to sweep many offense teams and kill defensive teams with Hydro Vortex is really what sets Manaphy apart.
Haze Mantine is about the only thing that can reliably counter all common variations of Hydro Vortex Manaphy (counting Ice beam + Energy Ball + Psychic as common coverage), and even it has literally no way to hurt Manaphy barring using up all 24 Scalds, meaning that Manaphy is much more likely to freeze (and force scald) or score a SpD drop.
+3 rain boosted hydro vortex alone (most possible on Rain teams, although its possible to achieve this level of set-up on a passive pokemon such as Chansey) will destroy almost any defensive pokemon, achieving feats such as one-shotting Venusaur, AV Tangrowth, Chansey, Tapu Fini and Toxapex. Even without rain, coverage moves will destroy most walls that try to switch into it, meaning that defensive teams have no real recourse apart from running multiple checks and hoping it doesn't have specific coverage.
Although Magearna does fairly well against offensive teams, it has much less raw power and no special attacking boost before a kill, meaning that defensive teams can easily wall it with a Chansey/Toxapex etc.
Waterzium manaphy is honestly much stronger, and you fail to take into account that Alakazam's only boosting move is Calm Mind, without the ability to effectively run a 180BP stab move or Tail Glow, or even run effective bulky sets.
The ability to pick between a speedboost to sweep many offense teams and kill defensive teams with Hydro Vortex is really what sets Manaphy apart.
Haze Mantine is about the only thing that can reliably counter all common variations of Hydro Vortex Manaphy (counting Ice beam + Energy Ball + Psychic as common coverage), and even it has literally no way to hurt Manaphy barring using up all 24 Scalds, meaning that Manaphy is much more likely to freeze (and force scald) or score a SpD drop.
+3 rain boosted hydro vortex alone (most possible on Rain teams, although its possible to achieve this level of set-up on a passive pokemon such as Chansey) will destroy almost any defensive pokemon, achieving feats such as one-shotting Venusaur, AV Tangrowth, Chansey, Tapu Fini and Toxapex. Even without rain, coverage moves will destroy most walls that try to switch into it, meaning that defensive teams have no real recourse apart from running multiple checks and hoping it doesn't have specific coverage.
Although Magearna does fairly well against offensive teams, it has much less raw power and no special attacking boost before a kill, meaning that defensive teams can easily wall it with a Chansey/Toxapex etc.
Waterzium manaphy is honestly much stronger, and you fail to take into account that Alakazam's only boosting move is Calm Mind, without the ability to effectively run a 180BP stab move or Tail Glow, or even run effective bulky sets.
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